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The fun of Cladistics: Things that are what they don't seem to be

Nesslig20

Active Member
arg-fallbackName="Nesslig20"/>
Systematics has come a long way since the pioneer work of Linnaeus. More recently, a phylogenetic approach to systematics (called cladistics) now classifies organisms explicitly according to their ancestral relationships. Previously, taxa could be paraphyletic, polyphyletic or monophyletic, but now only monophyletic are considered legit.

1622834899546.png

Still, many taxa of the old linnean system have turend out to be monophyletic anyway, so these have for the most part much stayed the same. For example, mammals are still mammals in the same sense...furry tetrapods that produce milk to nourish their young...and they are monophyletic (sharing an exclusive common ancestral lineage). Although the odd monotrememes (platypus and echidna) were added, despite them laying eggs, which no therian mammal (placental+marsupial) does, and the definition has become a little bit more complicated than just "fur+milk" to accomodate the mammals that are only known from fossils, from which it's difficult to tell whether they had fur or produced milk. But at the very least, all marsupials, placentals and monotremes are still in the same group of mammals to the exclusion of anything else.

The same cannot be said for other lineages though. The famous one that many science savvy people is dinosaurs, which now includes birds, thereby making them dinosaurs as well. But there are many other instances which not many (at least to me) appreciate. Sometimes, these new classifications can be so counter intuitive that many find it difficult to accept them. Here are a few examples.

1. Birds are Reptiles
As I said like I said previously, birds are a subgroup of dinosaurs. But hold on...did it ever crossed your mind that since dinosaurs are a group of reptiles, this would logically mean that birds are reptiles as well? Yes, it does!! But it seems so strange to think of birds as reptiles, doesn't it? Even among those who will happily point out that birds are dinosaurs, I don't see many who will say (with the same enthusiasm) that birds are also reptiles. Oh wait, who am I to point fingers. I certainly don't say birds are reptiles just as frequently as birds are dinosaurs. And yet, the notion that birds are dinosaurs used to be considered just as strange.

The fact is that cladistics as welll as paleontology has effectively demolished our intuitive view of what a "reptile" is. When you think of a reptile, you are likely having an image of a cold-blooded, naked scaly creature that sprawls on its belly with four limbs (except if it was a snake). Something that looks like a lizard or a crocodile. Although...extinct reptiles include (non-avian) dinosaurs and many marine reptiles like ichthyosaur, plesiosaurs and mosasaurs, which don't fit neatly into that stereotypical mold. There are even strong indications that many non-avian dinosaurs and also ichthyosaur were "warm-blooded". If it were only extant reptiles, the stereotype mostly holds (although there are even living reptiles that thermoregulate to some degree). But even if we were to ignore the extinct reptiles, the fact that crocodilians share more recent ancestry with birds than they do with lizards already shows that excluding birds from the reptile group makes it paraphyletic. So what it means to be a reptile is now very different from what you are used to in every day life.

There are many videos that goes into more detail why birds are reptiles, but this below is my personal favorite.


2. Snakes are Lizards
...And so are mosasaurs..

Just like birds are dinosaurs, most science savvy people are aware that "snakes are tetrapods. Despite them having no legs, the ancestors of snakes were tetrapods with legs, so according to monophyly, snakes are still tetrapods regardless. But snakes are specifically squamates, i.e. lizards!! Lizards such as iguanas and varanids and even the extinct mosasaurs (yes, they are also lizards) are more closely related to snakes, then any of them are to other lizards like gekkos. This phylogeny below shows mosasaurs as among the closest to the snakes (serpentes), but there is still some controversy about the placement of mosasaurs. Nevertheless, snakes are firmly placed among the other lizards.
1622837668986.png
But snakes aren't simply legless lizards. There are many legless lizards that are not snakes, such as glass lizards and legless skinks. You can distinguish them from snakes with some key features.
1622837361589.png

3. Whales are odd-toed hoofed mammals
Again, just like snakes, whales are still tetrapods, despite having lost some of their limbs. And most, even many laymen are aware that whales are marine mammals. But not many consider them artiodactyles, aka even-toed ungulate (i.e. hoofed) mammals. What on earth?!? TOED?? EVEN-TOED?!! HOOFED??!!! What are you talking about? Whales have flippers!! They don't have any toes, let alone an even number, let alone ones that are hoofed. But hold on. Whales are tetrapods, right? How can they be tretrapods without having four limbs?? It's because they descended from four-limbed ancestors. Likewise, they descended from even-toed ungulates and they are still even-toed ungulates. The closest living relatives of whales are hippos, and hippos are closer to whales than they are to any other even-toed ungulate.
1622839108563.png
The fancy name for even-toed ungulates is Artiodactyla and after it was found out that whales belong within this group, some tried to change the name from artiodactyla to "cetartiodactyla" putting a "cet" before the "artiodactyla" referring to the fancy name of whales "cetacea". Personally, I don't see the point. Like, we didn't rename "dinosauria" to "avedinosauria" when we found out birds (aves) are dinosaurs. Just keep the old name.

4. Butterflies are Moths
Butterflies and moths, seemingly as different as day and night...okay...poetry isn't my strong suit. But yeah, butterflies and moths seem so different, moths are active moslty at night while butterflies are active during the day.
1622839786793.png
Although, there are a few moths that have more things in common with butterflies than other moths. So monophyly demands that butterflies are moths as well. This video by AronRa is the most comprehensive explanation of why butterflies are a subset of moths, but you can skip to 12:44 to the most important part.


5. Ants & Bees are Wasps
Now we consider three groups at the same time. Bees, ants and wasps. They are grouped together within "hymenoptera", along with sawflies (which itself is also paraphyletic. Which means that bees, ants and wasps are also sawflies too, but let's not make things too complicated). But while bees, ants and wasps are viewed as seperate groups, the former two nest within the latter. Ants are a group of flightless wasps, bees on the other hand are wasps that became vegetarian.
1622840470179.png

5. Insects are crustaceans
Insects belong to a larger group called "hexapoda" named after their 6 legged body structure. These are all terrestrial...well...mostly. On the other hand, crustaceans are all living in the water...well...mostly. We have the isopods like the woodlice (which are often mistaken as insects). But if insects are crusteaceans, does that mean they descended from somthing like lobsters, crabs, shrimp or crayfish? No. Most of these stereotypical crustaceans that you can probably think of at the moment...the ones that we enjoy eating...belong in a specific sub group of crustaceans called decapods. Hexapods (incl. insects) are not decapods. But there are other, more obscure crustacean groups, such as branchiopoda (which includes the triops, often called a "living fossil") that are more closely related to insects then to lobsters and crabs.
1622841931405.png
Similar to the previous whale example, in light of this realisation that insects are crustaceans, some have changed the name "Pancrustacea". The best I can say is that this name (with the "pan" meaning "total" put in front of it) is at least better than, say "hexacrustacea" or "insecrustacea", but still. Pancrustacea = crustacea.

6. Tetrapods (incl. us) are Fish
You know that guy who will correct someone who thinks that whales are fish. Well, they are actually right, whales are fish, but for a different reason that they think. It's not the fact that whales "look like" fish. Whales are tetrapods, and tetrapods turns out to be a subset of fish. Again, some fish are more closley related to tetrapods than other fish. I could give the full explanation here for why tetrapods are a subset of fish, but this video explains it best.


7. Humans are apes, but we already know that.
However, all apes including humans are also monkeys.

Calling a chimp a monkey at the zoo will likely attract that guy again who pointed out that whales aren't fish. Chimps are apes, they aren't monkeys. But there is something very interesting with the language that we use here. My primary language is dutch and we don't have a separate word for "ape" and "monkey". We use "aap" or "ape" (plural), which sounds close to the english word "ape", but the usage of the word "aap" in the dutch language is more equivalent to how "monkey" is used in english. Everything from howler monkeys, baboons, chimps and humans is an "aap". So when I try to translate the phrase "chimps aren't monkeys, they are apes" into dutch in my head, it is almost like it is saying (semantically) "chimps aren't monkeys, they are monkeys" or (phonetically) "chimps aren't apes, they are apes". This is of course very confusing when you are dutch and trying to learn primate taxonomy. To make a distinction, we have invented very weird combo words. We refer to all monkeys (including apes and humans) as "apen", but with "apes" (hominoids) we use "mensapen", which literally translates to "humanapes". Yes, combining the words (mens) "human" and "apes". Referring specifically to the great apes (hominids) we say "mensachtigen", which literally translates to "humanoids"

To put this in a table
Fancy taxonomic nameEnglish nameDutch nameDutch name literally translated
Simiiformes (simian - simians)Monkey - MonkeysAap - ApenSemantic (Monkey - Monkeys)
Phonetic (Ape - Apes)
Hominoidea (hominoid - hominoids)Ape - ApesMensaap - MensapenHumanape - Humanapes
Hominidae (hominid - hominids)Great ape - Great apesMensachtige - MensachtigenHumanoid - humanoids

Anyway, the notion that humans are monkeys is probably the most offensive to some people among the examples I have given here. Being an ape is already bad enough, why do we have to be monkeys too?!! Well, first, apes and monkeys are awsome. It is not a bad association. In some respects, it is more offensive to them to be associated with a species that has done so much ecological damage and enacted devastating wars, but I digress. In any case, apes are monkeys because some monkeys such as baboons (the old world monkeys) are more closely related to us than they are to the new world monkeys. In fact, we are also old world monkeys (the image has thus a slight error in this regard).
1622843213070.png

Again, a full explanation for this is given by Aronra in these two videos:





So yeah, you're a monkeyfish.
 
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Truly excellent work. Spotted a couple of spelling errors, just in case you want to correct them.

Paragraph 2: Nourish
Section on birds as reptiles: Two different spellings of ichthyosaur, neither of which is correct.

Really good work. Like it a lot.
 
arg-fallbackName="Sparhafoc"/>
I do agree and appreciate your writing Nesslig20, but I still think you are running into a problem of prescriptivism. People use words mostly from tradition, but they also find utility in those terms. So even if though all non-arthropod terrestrial animals evolved from fish, and from a purely cladistic perspective are still just fish with modifications, people are obviously not going to start to consider every terrestrial animal a fish. I don't think it helps anyone to hotswap in informal terms in place of the proper scientific names. I think that's just inevitably going to cause confusion (and rejection) among people outside the relevant biological fields.

For me, it's wonderful and awe-inspiring enough to say that all non-arthropod terrestrial animals are descended from fish, that their anatomy originated in fish and was adapted to future purposes. That we, giraffe, and frogs have a grandmammy fish.

I also think there are other structural problems with this way of talking, because we know all life on Earth shares a common ancestor, and that the earlier organisms were single-celled, then accordingly we all evolved ultimately from single-celled organisms... so we're single celled organisms? For me, descent with modification puts equal value on the modification as it does on the descent - species change over time, and while their basal forms are rooted in their ancestral past, the adaptations accrued are sufficient to justify considering them distinct from their ancestral group without remotely needing to deny common ancestry.
 
arg-fallbackName="Deleted member 619"/>
Am I not right in thinking that, being polyphyletic, fish aren't a true clade anyway?

Might just be my failing memory. I haven't even glanced at biology for years.
 
arg-fallbackName="Sparhafoc"/>
There was a great book many years ago called The Relativity of Wrong, by Isaac Asimov. The main thematic argument therein being that there are degrees of wrongness from outright wrong, to just a little bit wrong, or wrong in certain contexts but right in others - so for example Newton was wrong about gravity, but only on certain scales and as such his models are still perfectly usable at appropriate scales.

I would suggest the corollary here: The Relativity of Right. There are often cases in specialist disciplines where something is right from within the context of the discipline but which offer no real usage for those outside the discipline; the scale is inappropriate.
 
arg-fallbackName="Deleted member 42253"/>
Saying 2045 + 1342 = 2400 is slightly wrong, saying 1 + 1 = 3 is a mistake on a collosal scale.
Saying a tomatoe is a vegetable is slightly wrong, saying a tomatoe is furniture, is a mistake on collosal a scale.
 
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Knowledge is knowing that tomatoes are a fruit. Wisdom is knowing not to put them in a fruit salad.
 
arg-fallbackName="Nesslig20"/>
I do agree and appreciate your writing Nesslig20, but I still think you are running into a problem of prescriptivism. People use words mostly from tradition, but they also find utility in those terms.
Sure, for some perspectives there is utility by traditional convention, but tradition and convention isn't necessarily correct. Let me use the tomato example as well (I can see Hackenslash beat me to the punch). The tomato is a fruit...yeah, I know I am that guy...but there is no arguing about that. Still, I can see the utility of culturally viewing the tomato as a vegetable, since in the kitchen it is more often used as a vegetable. Although, there are people who will eat a tomato as if it was an apple. I find that bizarre too, since when I am eating a tomato I think it is a vegetable as well. I don't eat it raw, I think it tastes bad (except for the tiny sweet tomatoes, these are fruit in the cultural sense to me). Even though I eat tomatoes as if they are vegetables, I am still fully aware that objectively it is a fruit.

Likewise, in systematics, cladistics is the objective system of classification and by that system you cannot exclude tetrapods from fish in the same way you cannot exclude birds from dinosaurs or ducks from birds. However, I can still see the conventional value of treating tetrapods as "not fish"...for example, if I were to arrange a dinner with someone who is a Pescatarian, I won't prepare pork or chicken and explain that these are technically fish, for the same reason I won't add tomatoes in a fruit salad and explain that tomatoes are fruit.

So even if though all non-arthropod terrestrial animals vertebrates evolved from fish, and from a purely cladistic perspective are still just fish with modifications, people are obviously not going to start to consider every terrestrial animal vertebrate a fish.
[I made some changes to your comment to make it more clear]

Well, that's just an assertion. You actually don't know that. A few decades back, people would have considered you an odd ball for saying that birds are dinosaurs, yet that has become the mainstream, even among the common public. Even wikipedia pages fully explain that birds are dinosaurs (and that humans are apes as well). Like, there was once a time when I heard my parents talking about dinosaurs and they said that rhinos were dinosaurs. They probably thought that a dinosaur is just an impressive big animal. I jumped in and explained that, no, rhinos aren't dinosaurs, but that birds are. At first they were confused but over time they understand.

There is no reason to say that this can't happen with regard to tetrapods being properly classified as fish.

I don't think it helps anyone to hotswap in informal terms in place of the proper scientific names.
There is no such thing as "informal" and "proper" names. Words have usages and commonly used names can be used in a scientifically proper manner. And the same is true the other way around. Dinosaur was originally a "proper scientific name" yet is is often used to refer to any big old extinct reptile.

And I think it actually helps better to use common names and used them in a scientifically proper manner, rather than strictly adhere to the fancy names only. Like saying:

"humans are apes" instead of "homo are hominoids".
Or
"snakes are lizards" instead of "serpentes are squamates"
"birds are dinosaurs" instead of "Aves are dinosaurs"

A strict adherence to only using the fancy names (unless your audience already is already familiar with them) would be very confusing. If you are targeting a new audience, you will likely to be forced to use the common names like "ape" or "bird" to explain what the term "hominoid" or "aves" means. Or if not, then the audience will likely associate the common words with the technical words (as it is arleady the case with these specific examples).

I think that's just inevitably going to cause confusion (and rejection) among people outside the relevant biological fields.
As I said before, I think the very opposite is actually the case. Since cladistics is the objective way of classification, if you educate people to employ cladistics, then systematics will be far less confusing.

I helped making this video that makes the point more clearer.


And I also think that non-biologists deserve to be less confused.
If you want to say that correcting people's preconceptions will often be confused at first...
(wait, I thought it was like this, but it turns out it was more like this??)
Then, sure, it will be confusing at first, but that counts for all education.

So, I reject this sentiment, since it is effectively saying we shouldn't try to teach in order to avoid making people confused....we shouldn't challenge "common sense"...we shouldn't give people the impression taht reality might seem bizarre or absurd based on what they previously held to be true.

In a sense, I want actually to make people (briefly) confused, so they might learn to no longer be confused.

1622889535767.png

For me, it's wonderful and awe-inspiring enough to say that all non-arthropod terrestrial animals are descended from fish, that their anatomy originated in fish and was adapted to future purposes. That we, giraffe, and frogs have a grandmammy fish.

I also think there are other structural problems with this way of talking, because we know all life on Earth shares a common ancestor, and that the earlier organisms were single-celled, then accordingly we all evolved ultimately from single-celled organisms... so we're single celled organisms?
No, since being "single celled" is a plesiomorphy, and on other instances an apomorphy, since there are things that have "gone back" to being single celled, multiple times even (homoplasy). Cladistics doesn't say that character states can change along evolutionary lineages, on the contrary in fact. Character state differences are analyzed to determine synapomorphies (shared derived traits) and the clades are based on these. So this isn't a coherent objection against cladistics.

For me, descent with modification puts equal value on the modification as it does on the descent - species change over time, and while their basal forms are rooted in their ancestral past, the adaptations accrued are sufficient to justify considering them distinct from their ancestral group without remotely needing to deny common ancestry.
This is essentially an argument for evolutionary taxonomy and it has been effectively dead.
There were once three systematic schools of thought.
  • Phenetics was basically the same as the old Linnaean classification where groups could be identified soly by how they looked. Although they devised statistical analyses to determine how similar things were. In this system, homoplasies could be used to put organisms in polyphyletic groups and be considered legit. Plesiomorphies could be used to construct paraphyletic groups. It wouldn't matter.
  • Clasitics, as mentioned before, only accepts monophyletic groups as legit.
  • Evolutionary taxonomy is more-or-less a compromise between the former two, accepting both monophyletic and paraphyletic groups, but rejecting polyphyletic groups.
Evolutionary taxonomy recognizes a paraphyletic group when a descendant lineage has evolved to be different enough such that it is no longer part of the group it descended from. The problem here is the term "different enough" is doing some heavy liften here. How different does a descended group need to be from its parent group for it to be excluded? If some descendants from a common ancestor are to be excluded, we need to be able to decide how many of them do we actually exclude. If birds are no longer reptiles since they are "too different", why not also their closest extinct relatives like velociraptor? Why not all dinosaurs as well?? They are very different from any reptile alive today? Why isn't that different "enough"? Why then are turtles still reptiles? They are also very different, they have shells made of ribs, unlike any other vertebrate. Which groups are to be excluded is up tot he person making the decision. That's why paraphyletic groups are inherently arbitrary. It's also the problem that evolutionary taxonomy accepts the cladistics objection against polyphyletic groups, but the same objection works equally well against paraphyletic group. When evolutionary taxonomy accepts paraphyletic group, it really doesn't have any objection against polyphyletic ones.

The bottom line: There is no equal value between "descent" and "modification" when it comes to systematics. Classification based on the similarities/differences of evolved traits (modification) is arbitrary, as explained previously. However, the pattern of phylogeny (descent) exists independently of what traits we arbitrarily choose to group organisms, which is why classification based on phylogeny is objective. Hence why cladistics prevails.

Am I not right in thinking that, being polyphyletic, fish aren't a true clade anyway?
Might just be my failing memory. I haven't even glanced at biology for years.
I think you meant "paraphyletic" and sure, how "fish" is commonly used in everyday life is paraphyletic.
Here, I am pointing out that this usage is arbitrary. When we apply objective classification, we cannot exclude tetrapods from fish.

But here is the thing. I am not saying that words referring to groups of organisms cannot be used in different ways that doesn't fit in cladistics. I am just pointing out that...objectively speaking...the cladistic usage is more correct.
 
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No, I very definitely meant polyphyletic. You can tell, because that's the word I used, and I'm good at words, I'm told.
 
arg-fallbackName="Led Zeppelin"/>
Can someone tell me if morphology is considered at all anymore in cladistics or do they only compare gene sequences now or what? Sorry if this has already been explained. I dont understand all the words in this thread.
 
arg-fallbackName="Deleted member 619"/>
Can someone tell me if morphology is considered at all anymore in cladistics or do they only compare gene sequences now or what? Sorry if this has already been explained. I dont understand all the words in this thread.
Morphology is considered pretty much only as a first avenue, because we know it to be faulty and to give erroneous conclusions about what should be in what clade. For instance, morphology would never have placed cetaceans in the same order as cows, yet they are. Morphology would have placed thylacines and dogs in the same genus, probably (although the pouch gives the game away), when they can't be related until we get to class level (mammalia). The molecular data are always accurate, while morphological traits do not. All else aside, convergent evolution gives rise to thylacines and dogs, whose morphology is, at first glance, very similar. Again, the pouch gives it away, so this probably isn't the best example, but it's by no means the only one, it's just the one I thought of.

Best advice: if there's a word you don't understand, ask (although wiki is an excellent source for terminology; I'd stay away from dictionaries, not least because they're horrible sources for what words mean, especially technical terminology).
 
arg-fallbackName="Nesslig20"/>
Can someone tell me if morphology is considered at all anymore in cladistics or do they only compare gene sequences now or what? Sorry if this has already been explained.
No worries. Today, any data (both morphological and genetic) are used in determining which phylogenetic relationship(s) is/are the most well-supported. It is just that genetic data is a lot more extensive. Like, with morphological characters, you can have hundreds, but with genetics, the data points can easily be thousands or more. There is also the fact that the phylogenetic signal from morphological data is more easily confounded by shared characters that are a case of homoplasy (convergent evolution), whereas with genetic data that is less of an issue. But morphological data is still often used, especially when it comes to determining the phylogeny of extinct species which are only known from fossils for which we don't have any DNA.

I dont understand all the words in this thread.
If there are terms you don't understand, please copy paste them and just ask.

Morphology is considered pretty much only as a first avenue, because we know it to be faulty and to give erroneous conclusions about what should be in what clade. For instance, morphology would never have placed cetaceans in the same order as cows, yet they are.
Actually, that is no longer the case. Although, the first indications that whales were nested within the artiodactyles, closest to the hippos, was indeed due to the genetic data. But eventually, we found fossils of whales that still had legs, with the double-pulley ankle joint that is unique to artiodactyls.
1622931291398.png
So genetic data first pointed out something, and later morphological data corroborated it.

Morphology would have placed thylacines and dogs in the same genus, probably (although the pouch gives the game away), when they can't be related until we get to class level (mammalia).
Eh...no. Even the morphology was already clear that they are convergent. And they aren't really THAT convergent. if you are trained in anatomy, then telling the difference (even from just the skulls, no pouch that would be very telling) is rather easy.
This has actually been covered in the Dover trial. The similarity between dogs and thylacines was used as an argument against evolution in the cretelligent designism book "of Panda's and people", but one expert effectively gave a lecture to the lawyers and the judge explaining why this isn't the case, and we can fairly easily tell the differences.

The molecular data are always accurate, while morphological traits do not.
That's not true. Molecular data can also be confounded. And phylogenies are never "always accurate" since the analysis is inherintly statistical, we can only say that the accepted phylogeny is the "most well-supported by the data" but still open to revision in light of new data.

All else aside, convergent evolution gives rise to thylacines and dogs, whose morphology is, at first glance, very similar. Again, the pouch gives it away, so this probably isn't the best example, but it's by no means the only one, it's just the one I thought of.
I can think of a better example about genetics being better indicator than morphology, although it is not the case of convergence.
The big divisions between placental mammals today into the following groups:

1622931516041.png
1622931880187.png
Is almost entirely defined by genetic data. Like, laurasiatheria in particular has no morphological features that are unique to its members. It's purely defined by genetic data. The only thing outside the genetics that seems to correlate pretty well with these groups is their ancestral bio-geography, i.e. in which continent the common ancestor of each respective group used to be. Hence why some are named after their continent of origin: Afrotheria = africa and Laurasiatheria = Laurasia (North America+Europe+Asia).
1622932751044.png

The likely reason why there is little to no morphological data to define these groups is that early placental mammal evolution with regard to morphology was very slow. It's predicted that the respective common ancestors of each major group were very similar to each other. Each lineage hadn't evolved many apomorphies (derived features) despite having diverged from each other for some considerable time. This is a recent paper that goes into more detail on this.
 
arg-fallbackName="Deleted member 619"/>
Actually, that is no longer the case. Although, the first indications that whales were nested within the artiodactyles, closest to the hippos, was indeed due to the genetic data. But eventually, we found fossils of whales that still had legs, with the double-pulley ankle joint that is unique to artiodactyls.
View attachment 254
So genetic data first pointed out something, and later morphological data corroborated it.

[/QUOTE]
Which means that it's still the case. You've raised a corollary point, not an objection.

Eh...no. Even the morphology was already clear that they are convergent. And they aren't really THAT convergent. if you are trained in anatomy, then telling the difference (even from just the skulls, no pouch that would be very telling) is rather easy.
This has actually been covered in the Dover trial. The similarity between dogs and thylacines was used as an argument against evolution in the cretelligent designism book "of Panda's and people", but one expert effectively gave a lecture to the lawyers and the judge explaining why this isn't the case, and we can fairly easily tell the differences.
Well, I did say it wasn't the best case. I was talking about a principle. The principle is still true, even 9if the example was crap.
That's not true. Molecular data can also be confounded. And phylogenies are never "always accurate" since the analysis is inherintly statistical, we can only say that the accepted phylogeny is the "most well-supported by the data" but still open to revision in light of new data.
That's a fair point.
 
arg-fallbackName="Led Zeppelin"/>
Morphology is considered pretty much only as a first avenue, because we know it to be faulty and to give erroneous conclusions about what should be in what clade. For instance, morphology would never have placed cetaceans in the same order as cows, yet they are. Morphology would have placed thylacines and dogs in the same genus, probably (although the pouch gives the game away), when they can't be related until we get to class level (mammalia). The molecular data are always accurate, while morphological traits do not. All else aside, convergent evolution gives rise to thylacines and dogs, whose morphology is, at first glance, very similar. Again, the pouch gives it away, so this probably isn't the best example, but it's by no means the only one, it's just the one I thought of.

Best advice: if there's a word you don't understand, ask (although wiki is an excellent source for terminology; I'd stay away from dictionaries, not least because they're horrible sources for what words mean, especially technical terminology).
No worries. Today, any data (both morphological and genetic) are used in determining which phylogenetic relationship(s) is/are the most well-supported. It is just that genetic data is a lot more extensive. Like, with morphological characters, you can have hundreds, but with genetics, the data points can easily be thousands or more. There is also the fact that the phylogenetic signal from morphological data is more easily confounded by shared characters that are a case of homoplasy (convergent evolution), whereas with genetic data that is less of an issue. But morphological data is still often used, especially when it comes to determining the phylogeny of extinct species which are only known from fossils for which we don't have any DNA.


If there are terms you don't understand, please copy paste them and just ask.


Actually, that is no longer the case. Although, the first indications that whales were nested within the artiodactyles, closest to the hippos, was indeed due to the genetic data. But eventually, we found fossils of whales that still had legs, with the double-pulley ankle joint that is unique to artiodactyls.
View attachment 254
So genetic data first pointed out something, and later morphological data corroborated it.


Eh...no. Even the morphology was already clear that they are convergent. And they aren't really THAT convergent. if you are trained in anatomy, then telling the difference (even from just the skulls, no pouch that would be very telling) is rather easy.
This has actually been covered in the Dover trial. The similarity between dogs and thylacines was used as an argument against evolution in the cretelligent designism book "of Panda's and people", but one expert effectively gave a lecture to the lawyers and the judge explaining why this isn't the case, and we can fairly easily tell the differences.


That's not true. Molecular data can also be confounded. And phylogenies are never "always accurate" since the analysis is inherintly statistical, we can only say that the accepted phylogeny is the "most well-supported by the data" but still open to revision in light of new data.


I can think of a better example about genetics being better indicator than morphology, although it is not the case of convergence.
The big divisions between placental mammals today into the following groups:

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Is almost entirely defined by genetic data. Like, laurasiatheria in particular has no morphological features that are unique to its members. It's purely defined by genetic data. The only thing outside the genetics that seems to correlate pretty well with these groups is their ancestral bio-geography, i.e. in which continent the common ancestor of each respective group used to be. Hence why some are named after their continent of origin: Afrotheria = africa and Laurasiatheria = Laurasia (North America+Europe+Asia).
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The likely reason why there is little to no morphological data to define these groups is that early placental mammal evolution with regard to morphology was very slow. It's predicted that the respective common ancestors of each major group were very similar to each other. Each lineage hadn't evolved many apomorphies (derived features) despite having diverged from each other for some considerable time. This is a recent paper that goes into more detail on this.
I thank you both. I am sorry I am an asshole sometimes but I think it is a fact that the willingness and the ability to convey information to a layperson such as myself should be greatly appreciated. I am not an atheist but still you take the time to help me.
 
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I have this congenital disease that doesn't allow me to leave questions unanswered.
 
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